- #Pymol tutorial 10 answers how to#
- #Pymol tutorial 10 answers .exe#
- #Pymol tutorial 10 answers install#
Yes, use the pse_export_version setting (please let us know if you experience issues with Python 3). Can PyMOL 2.0 export Session Files for PyMOL 1.x? But if you miss a Python package, it's very likely available from Anaconda Cloud! All our bundles are based on the Anaconda Python distribution and ship with the conda package manager. Please upgrade to PyMOL 2.1 (see driver installation instructions) Will PyMOL also work with other Python installations (system Python, Homebrew, MacPorts, etc.)? 3Dconnexion Space Navigator does not work Where is AxPyMOL 2.0+?ĪxPyMOL 2.5.0 is now available. Save it on your workstation and then navigate to it when PyMOL prompts you for a license. On Linux: $HOME/anaconda3/share/pymol/license.lic What do I do with my new license file?ĭon't open it.Or: /Library/Application Support/Schrodinger/licenses/*.lic ( gatekeeper-friendly, since PyMOL 2.2.2) On macOS: /Applications/PyMOL.app/Contents/share/pymol/license.lic (not gatekeeper-friendly).On Windows: C:\ProgramData\PyMOL\share\pymol\license.lic.Yes, the license file can be placed at $PREFIX/share/pymol/license.lic, for example: Can the license file be installed globally instead of per user?
#Pymol tutorial 10 answers how to#
Save it on your workstation and then navigate to it when PyMOL prompts you for a license.įrequently Asked Questions How to do silent installation on Windows? Hint: Conda works great with isolated environments.
#Pymol tutorial 10 answers install#
More informationĬonda install -c schrodinger -c conda-forge pymol All dependencies, including python, are based off of conda-forge.
#Pymol tutorial 10 answers .exe#
exe installer and follow the setup wizard This archive was generated by hypermail 2.1. > I already checked the NAMD tutorial guide but did not get an answer. > Any suggestion please because I want to see RMSF highest value for what > Info) Fragments: 5537 Protein: 2 Nucleic: 0
> Info) Bondtypes: 0 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0 > A quick look into the TCL window show about 5760 residues > But when I look the same protein in PyMol or other visualizer, its shows > I have calculated RMSF using NAMD/VMD and got a plot of 902 residues vs In the RMSF, we need to know, what atom selection did you use for thisĬalculation, and for that matter, how did you run it? To understand your plot of '902 residues' Including ions/water when you look in the TCL window. NAMD/VMD are probably counting all residues I think it is important to be clear about what is being counted as a Reply: Mi Yang: "Re: Ambiguity among number of residues as counted in VMD and PyMol for RMSF".Next in thread: Mi Yang: "Re: Ambiguity among number of residues as counted in VMD and PyMol for RMSF".In reply to: Mi Yang: "Ambiguity among number of residues as counted in VMD and PyMol for RMSF".Previous message: Sebastian S: " Example of submission script on Comet/Stampede GPUs".Next message: Jérôme Hénin: "Re: path CV".Namd-l: Re: Ambiguity among number of residues as counted in VMD and PyMol for RMSF Re: Ambiguity among number of residues as counted in VMD and PyMol for RMSFįrom: Peter Freddolino ( petefred_at_)
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